cimarq2020 14 Ene , 2019


  1. Aedo JE, Fuentes-Valenzuela, M, Molina A, Valdes JA (2019) Quantitative proteomics analysis of membrane glucocorticoid receptor activation in rainbow trout skeletal muscle. comparative biochemistry and physiology d-genomics & proteomics. 32:


  1. Dettleff P, Hormazabal E, Aedo J, Fuentes M, Meneses C, Molina A, Valdes JA (2019) Identification and Evaluation of Long Noncoding RNAs in Response to Handling Stress in Red Cusk-Eel (Genypterus chilensis) via RNA-seq. Marine Biotechnology. DOI 10.1007/s10126-019-09934-6.


  1. Bulboa C, Massad IP, Contreras-Porcia L, Zapata J, Castaneda F, Ramirez ME, Gil-Kodaka P (2019) Concise review of genus Chondracanthus (Rhodophyta: Gigartinales). Journal of applied phycology. DOI 10.1007/s10811-019-01956-w


  1. Gonzalez P, Dettleff P, Valenzuela C, Estrada JM, Valdes JA, Meneses C, Molina A (2019) Evaluating the genetic structure of wild and commercial red cusk-eel (Genypterus chilensis) populations through the development of novel microsatellite markers from a reference transcriptome. Molecular Biology Reports.46: 5875-5882.


  1. Zapata J, Meynard A, Anguita C, Espinoza C, Alvear P, Kumar M, Contreras-Porcia L (2019) Non-Random Distribution and Ecophysiological Differentiation of Pyropia Species (Bangiales, Rhodophyta) Through Environmental Gradients. Journal of Phycology 55: 1140-1153.


  1. Muñoz JLP, Ocarnpos D, Poblete-Morales M, Oyarzún R, Morera FJ, Tapia-Cammas D, Avendaño-Herrera R, Vargas-Chacoff L (2019) Effect of Flavobacteriurn psychrophilum on the neuroendocrine response of rainbow trout (Oncorhynchus mykiss) in a time course experiment. Comparative Biochemistry and Physiology A.Molecular & Integrative Physiology. 236. DOI 10.1016/j.cbpa.2019.110525.


  1. Levipan HA, Tapia-Cammas D, Molina V, Irgang R, Toranzo AE, Magarinos B, Avendaño-Herrera R (2019) Biofilm development and cell viability: An undervalued mechanism in the persistence of the fish pathogen Tenacibaculum maritimum. Aquaculture. 511: DOI 10.1016/j.aquaculture.2019.734267.


  1. Kampfer P, Irgang R, Poblete-Morales M, Fernandez-Negrete G, Glaeser SP, Fuentes-Messina D, Avendaño-Herrera R (2019) Paracoccus nototheniae nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic. International Journal of Systematic and Evolutionary Microbiology 69: 2794-2800.


  1. Rivas-Aravena A, Fuentes-Valenzuela M, Escobar-Aguirre S, Gallardo-Escarate C, Molina A, Valdes JA (2019) Transcriptomic response of rainbow trout (Oncorhynchus mykiss) skeletal muscle to Flavobacterium psychrophilum. Comparative Biochemistry and Physiology D-Genemics & Proteomics. 31: 10.1016/j.cbd.2019.100596.


  1. Bethke J, Arias-Muñoz E, Yañez A, Avendaño-Herrera R (2019) Renibacterium salmoninarum iron-acquisition mechanisms and ASK cell line infection: Virulence and immune response. Journal of Fish Diseases. 42:1283-1291.


  1. Avendaño-Herrera R, Arias-Muñoz E, Rojas V, Toranzo AE, Poblete-Morales M, Cordova C, Irgang R (2019) Evidence for the facultative intracellular behaviour of the fish pathogen Vibrio ordalii. Journal of Fish Diseases. 42: 1447-1455.


  1. Carcamo C, Estrada JM, Canales.Cerro C, Hernandez MF, Herrera R, Malina-Burgos BE, Riquelme D, Salas C, Zuñiga M, Klarian SA (2019) Evaluating the relationship between the growth of fish and energy component of their prey. Cogent Environmental Science. 5: 1609225.


  1. Figueroa J, Carcamo J, Yañez A, Olavarria V, Ruiz P, Mariquez R, Muñoz C, Romero A, Avendaño-Herrera R (2019) Addressing viral and bacterial threats to salmon farming in Chile: historical contexts and perspectives for management and control. Reviews in Aquaculture. 11: 299-324.


  1. Ortega C, Canas-Lopez L, Irgang R, Fajard R, Poblete-Morales M, Valladares-Carranza B, Tapia-Cammas D, Avendaño-Herrera R (2019) First detection of spring viraemia of carp virus in common carp (Cyprinus carpio) affected by a septicaemic disease in Mexico. Journal of Fishes Diseases 42: 667-675.


  1. Isla A, Saldarriaga-Cordoba M, Fuentes DE, Albornoz R, Haussmann D, Mancilla-Schulz J, Martinez A, Figueroa J, Avendaño-Herrera R, Yañez A (2019) Multilocus sequence typing detects new Piscirickettsia salmonis hybrid genogroup in Chilean fish farms: Evidence for genetic diversity and population structure. Journal of Fish Diseases. 42: 521-737.


  1. Meynard A, Zapata J, Salas N, Betancourtt C, Perez-Lara G, Castañeda F, Ramirez ME, Bulboa C, Guillemin ML, Contreras-Porcia L. (2019) Genetic and morphological differentiation of Porphyra and Pyropia species (Bangiales, Rhodophyta) coexisting in a rocky intertidal in central Chile. Journal of Phycology 55: 297-313.


  1. Valenzuela CA, Escobar-Aguirre S, Zuloaga R, Vera-Tobar T, Mercado L, Bjornsson BT, Valdes JA, Molina A (2019) Stocking density induces differential expression of immune-related genes in skeletal muscle and head kidney of fine flounder (Paralichthys adspersus). Veterinary Imnunology and Immunopathology. 210:23-27.


  1. Levipan HA, Irgang R, Tapia-Cammas D, Avendaño-Herrera R (2019) A high-throughput analysis of biofilm formation by the fish pathogen Tenacibaculum dicentrarchi. Journal of Fish Diseases. 42:617-621.


  1. Yepsen DV, Levipan HA, Molina V (2019) Nitrospina bacteria in a rocky intertidal habitat (Quintay Bay, central Chile). Microbiologyopen. 8: e646.


  1. Oyarzún PA, Toro JE, Nuñez JJ, Gardner JPA (2019) Genetic variability of Mytilus galloprovincialis (Mollusca: Bivalvia): the genetic pattern of an invasive marine species. ISJ-Invertebrate Survival Journal. 16:206.


  1. Irgang R, Poblete-Morales M, Gomez-Uchida D, Avendaño-Herrera R (2019) First description of health status and associated bacterial diversity from non-native Chinook salmon (Oncorhynchus tshawytscha, Walbaum 1792) naturalised in a large river system from southern Chile. Bulletin of the European Association of Fish Pathologists. 39: 60-69.


  1. Alvarado-Rybak M, Haro D, Oyarzún PA, Dougnac C, Gutierrez J, Toledo N, Leiva N, Peña C, Cifuentes C, Muñoz N, Monti E, Soto-Azat C & Pincheira B. (2019) A Mass stranding event of long-finned pilot whale (Globicephala melas) in Southern Chile. Aquatic Mammals 45: 447-455.


  1. Latorre N, Castaneda F, Meynard A, Rivas J, Contreras-Porcia L (2019) First approach of characterization of bioactive compound in Pyropia orbicularis during the daily tidal cycle. Latin American Journal of Aquatic Research. 47:826-840




  1. Catrejón-Najera J, Ortega C, Fajardo R, Irgang R, Tapia-Cammas D, Poblete-Morales M, Avendaño-Herrera R (2018). Isolation characterization, virulence potential of Weissella ceti responsible for weissellosis outbreak in rainbow trout (Oncorhynchus mykiss) cultured in Mexico. Transboundary and Emerging Diseases. 65: 1401-1407.


  1. Parmentier E, Bahri MA, Plenevaux A, Fine ML, Estrada JM (2018). Sound production and sonic apparatus in deep-living cusk-eels (Genypterus chilensis and Genypterus maculatus). Deep-Sea Research Part I: Oceanographic Research Papers. 141: 83-92.


  1. Sallaberry-Pincheira P, Galvez P, Molina-Burgos BE, Fernandoy F, Melendez R, Klarian SA (2018). Diet and food consumption of the Patagonian toothfish (Dissostichus eleginoides) from South-Pacific Antarctic waters. Polar Biology 41: 2379-2385.


  1. Rojas V, Lange-Morales B, Avendaño-Herrera R, Poblete-Morales M, Tapia-Cammas D, Guzman F, Marshall SH, Mercado L (2018). Detection of muscle-specific creatine kinase expression as physiological indicator for Atlantic salmon (Salmo salar L) skeletal muscle damage. Aquaculture 496: 66-72.


  1. Mella-Flores D, MacHon J, Contreras-Porcia L, Mesa-Campbell S, Dassow PV (2018) Differential responses of Emiliania huxleyi (Haptophyta) strains to copper excess. Cryptogamie, Algologie 39: 481-509.


  1. Avendaño-Herrera R. (2018) Proper antibiotics use in the Chilean salmon industry: Policy and technology bottlenecks. Aquaculture 495: 803-805.


  1. Bethke J, Yañez AJ, Avendaño-Herrera R (2018) Comparative genomic analysis of two Chilean Renibacterium salmoninarum isolates and the type strain ATCC 33209T. Genome Biology Evolution 10: 1816-1822.


  1. Ortega C, García I, Irgang R, Fajardo R, Tapia-Cammas D, Acosta J, Avendaño-Herrera R (2018) First identification and characterization of Streptococcus iniae obtained from tilapia (Oreochromis aureus) farmed in Mexico. Journal of Fish Diseases 41: 773-782.


  1. Avendaño-Herrera R, Irgang R, Tapia-Cammas D (2018) PCR procedure for detecting the fish pathogen Tenacibaculum dicentrarchi. Journal of Fish Diseases 41: 715-719.


  1. Zuloanga R, Almarza O, Valdés JA, Molina A, Pulgar J (2018) Oceanographic upwelling conditions influence signaling pathways involved in muscle growth of intertidal fish. Comparative Biochemistry and Physiology Part – B: Biochemistry and Molecular Biology 218: 37-43.


  1. Betancurtt C, Zapata J, Latorre N, Anguita C, Castañeda F, Meynard A, Fierro C, Espinoza C, Guajardo E, Nuñez A, Salas N, Gonzalez C, Ramirez ME, Bulboa-Contador C, Contreras-Porcia L (2018) Spatio-temporal variation in the composition of the macroalgae assemblage of the intertidal rocky zone from maitencillo, valparaíso, central coast of Chile. Revista de Biologia Marina y Oceanografía 53: 105-117.


  1. Calquin P, Ruiz P, Oliver C, Sanchez P, Haro R, Oliva H, Vargas-Chacoff L, Avendaño-Herrera R (2018) Physiological evidence that Piscirickettsia salmonis produces siderophores and uses iron from different sources. Journal of Fish Diseases 41: 553-558.


  1. Klarian SA, Canales-Cerro C, Barria P, Zarate P, Concha F, Hernandez S, Heidemeyer M, Sallaberry-Pincheira P, Melendez R (2018). New insights on trophic ecology of blue (Prionace glauca) and shortfin mako sharks (Isurus oxyrinchus) from the oceanic eastern South Pacific. Marine Biology Research 14:173-182.


  1. Levipan HA, Quezada J, Avendaño-Herrera R (2018) Stress tolerance-related genetic traits of fish pathogen Flavobacterium psychrophilum in a mature biofilm. Frontiers in Microbiology 9:18.


  1. Mendez KN, Zuloaga R, Valenzuela CA, Bastias-Molina M, Meneses C, Vizoso P, Valdés JA, Molina A (2018) RNA-seq analysis of compensatory growth in the skeletal muscle of fine flounder (Paralichthys adspersus). Aquaculture 490:270-280.


  1. Illesca A, Oyarzún PA, Toro JE, Gardner JPA (2018) Morphometric variability of smooth-shelled blue mussels from the Pacific coast of South America. Biological Journal of the Linnean Society, 125: 194-209.


  1. Vega R, Sepulveda C, Barnert M, Mardones A, Encina-Montoya F, Oberti C, Ramirez D, Estrada JM (2018) Reproductive capacity of the red cusk-eel Genypterus chilensis (Guichenot, 1848) in captivity. Latin American Journal of Aquatic Research 46:489-494.


  1. Sepulveda F, Galvez P, Molina-Burgos BE, Meléndez R, Klarian SA (2018). Feeding habits of Cardinalfish Epigonus crassicaudus, combing stomach contents and stable isotopes. Revista de Biología Marina y Oceanografía 53: 31-73.


  1. Klarian SA, Molina-Burgos BE, Saavedra A, Galvez P, Vargas R (2018). New insights on feeding habits of the southern blue whiting Micromesistius australisin eastern south Pacific waters. Journal of Applied Ichthyology 34: 694-697.


  1. Canales-Cerro C, Barría P, Zarate P, Azocar J, Melendez R, Klarian SA (2018). Trophic ecology of two snake mackerels (Gempylidae) off south eastern Pacific waters. Revista de Biología Marina y Oceanografía 53: 57-62.


  1. Molina-Burgos BE, Valenzuela-Sánchez A, Alvarado-Rybak M, Klarian SA, Soto-Azat C (2018). Trophic ecology of the endangered Darwin’s frog inferred by stable isotopes. Endangered Species Research. 36: 269-278.


  1. Alvarez-Varas R, Morales-Moraga D, Gonzalez-Acuña D, Klarian SA, Vianna JA. (2018) Mercury exposure in Humboldt (Spheniscus humboldti) and chinstrap (Pygoscelis antarctica) penguins throughout Chilean coast and Antarctica. Archives in environmental contamination and toxicology 75: 75-86.


  1. Bird C.,.. Klarian SA et al. (2018) A global perspective on the trophic geography of sharks. Nature Ecology and Evolution 2: 299-305.



  1. Irgang R, Gonzalez-Luna R, Gutierrez J, Poblete-Morales M, Rojas V, Tapia-Cammas D, Avendaño-Herrera R (2017). First identification and characterization of Tenacibaculum dicentrarchi isolated from Chilean red conger eel (Genypterus chilensis, Guichenot 1848). Journal of Fish Diseases 40:1915-1920.


  1. Aballai V, Aedo JE, Maldonado J, Bastias-Molina M, Silva H, Meneses C, Boltoña S, Reyes A, Molina A, Valdes JA (2017). RNA-seq analysis of the head-kidney transcriptome response to handling-stress in the red cusk-eel (Genypterus chilensis). Comparative Biochemistry and Physiology – Part D: Genomics and Proteomics 24:111-117.


  1. Iturriaga M, Espinoza MB, Poblete-Morales M, Feijoo CG, Reyes AE, Molina A, Avendaño-Herrera R (2017). Cytotoxic activity of Flavobacterium psychrophilum in skeletal muscle cells of rainbow trout (Oncorhynchus mykiss). Veterinary Microbiology 210:101-106.


  1. Muniesa A, Mardones FO, Chávez MC, Montoya L, Cabanillas JA, de Blas I, Martinez-López B (2017). Spatial Epidemiology and Risk Factor Analysis of White Spot Disease in the Shrimp Farming Industry of Sinaloa, Mexico, from 2005 to 2011. Transboundary and Emerging Diseases 64:1510-1518.


  1. Valenzuela CA, Zuloaga R, Poblete-Morales M, Vera-Tobar T, Mercado L, Avedaño-Herrera R, Valdés JA, Molina A (2017). Fish skeletal muscle tissue is an important focus of immune reactions during pathogen infection. Developmental and Comparative Immunology 73:1-9.


  1. Albornoz R, Valenzuela K, Pontigo JP, Sanchez P, Ruiz P, Avendaño-Herrera R, Romero A, Oliver C, Yañez A (2017). Identification of chemotaxis operon cheYZA and cheA gene expression under stressful conditions in Piscirickettsia salmonis. Microbiology Pathogenesis. 107:436-441.


  1. Espinoza MB, Aedo JE, Zuloaga R, Valenzuela C, Molina A, Valdés JA (2017). Cortisol Induces reactive oxygen species through a membrane glucocorticoid receptor in Rainbow Trout myotubes. Journal of Cellular Biolchemistry 118:718-725.


  1. Avendaño-Herrera R, Tobar JA, Tobar I, Fernández-Caro C (2017). Universal probe library assay for the detection of infectious pancreatic necrosis virus genogroups 1 and 5 in salmonid tissues. Aquaculture Research 48: 1962-1967.


  1. Levican A, Lasa A, Irgang R, Romalde JL, Poblete-Morales M, Avendaño-Herrera R (2017). Isolation of Vibrio tapetis from two native fish species (Genypterus chilensis and Paralichthys adspersus) reared in Chile and description of Vibrio tapetis subsp. quintayensis subsp. nov. International Journal of Systematic and Evolutionary Microbiology 67:716-723.


  1. Naour S, Espinoza BM, Aedo JE, Zuloaga R, Maldonado J, Bastias-Molina M, Silva H, Meneses C, Gallardo-Escarate C, Molina A, Valdés JA (2017). Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis. PloS ONE 12: e0176447.


  1. Landaeta MF, Vera-Duarte J, Manriquez K, Marcovich N, Latorre-Melin L, López-Berger V, Latelier J, Alvarado-Niño M, Masotti I, La Mesa M (2017). Trophic plasticity of larval notothenioid fish Harpagifer antarcticus in shallow waters from the South Shetland Islands, Antarctica. Polar Biology 40: 837-851.


  1. Bethke J, Avendaño-Herrera R (2017). Comparative genome analysis of two Streptococcus phocae subspecies provides novel insights into pathogenicity. Marine Genomics 31: 53-61.


  1. Avendaño-Herrera R, Tapia-Cammas D, Aedo A, Saldivia P, Ortega C, Irgang R (2017). Disease caused by Yersinia ruckeri serotype O2b found in Chilean-farmed coho salmon, Oncorhynchus kisutch (Walbaum, 1792). Journal of Fish Diseases 40:279-285.


  1. Bethke J, Quezada J, Poblete-Morales M, Irgang R, Yañez A, Oliver C, Avendaño-Herrera R (2017). Biochemical, serological, and genetic characterisation of Renibacterium salmoninarum isolates recovered from salmonids in Chile. Bulletin of the European Association of Fish Pathologist 37: 169:180.


  1. Contreras-Porcia L, Cristoffanini C, Meynard A, Kumar M (2017). Tolerance pathways to desiccation stress in seaweeds. Systems Biology of Marine Ecosystems. 13-33.


  1. Contreras-Porcia L, Meynard A, López-Cristoffanini C, Latorre N, Kumar M (2017). Marine metal pollution and effects on seaweed species. System Biology of Marine Ecosystem 35-48.